References and Further Reading

9. References and Further Reading#

  • Franzosa EA et al., Functional profiling of metagenomes and metatranscriptomes, Nature Methods (2018).

  • Westreich ST et al., SAMSA2: a standalone metatranscriptome analysis pipeline, PeerJ (2018).

  • Recommended tool documentation (FastQC, fastp, SortMeRNA, HUMAnN3, DESeq2).