References and Further Reading
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- Franzosa EA et al., *Functional profiling of metagenomes and metatranscriptomes*, Nature Methods (2018).
- Westreich ST et al., *SAMSA2: a standalone metatranscriptome analysis pipeline*, PeerJ (2018).
- Recommended tool documentation (FastQC, fastp, SortMeRNA, HUMAnN3, DESeq2).